pre-coordination - 2018-May Genomics #65

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    • Type: Change Request
    • Resolution: Not Persuasive
    • Priority: Medium
    • Genomics Reporting (FHIR)
    • STU3
    • Clinical Genomics
    • (profiles) [deprecated]
    • Guiding Principles
    • Hide

      WGM Jan 2019: Not Persuasive

      We have designed our profiles to meet the needs of exchanging clinical genomic information in current clinical practice. If other provenance/details is needed, new profiles may be created or existing ones updated.

      Show
      WGM Jan 2019: Not Persuasive We have designed our profiles to meet the needs of exchanging clinical genomic information in current clinical practice. If other provenance/details is needed, new profiles may be created or existing ones updated.
    • Arthur / Bob F: 19-0-0
    • Enhancement

      Existing Wording: It avoids pre-coordinating the type of variant, medication or other information into the Observation.code as this makes it easier to leverage industry standard terminologies for genetic information (e.g. HGVS) and avoids needing to duplicate this information into observation coding systems such as LOINC.

      Comment:

      In principle, avoiding pre-coordination is crucial to the usability of our specification for analytics. Pre-coordinating a bio-marker into an observation.code is perhaps the extreme case. But also, including observation components holding information pertaining to the observation.value is also a type of pre-coordination, which should be avoided as well, for example, interpretation, relevance, or any type of downstream analysis. HGVS is different in that it?s a notation rather than terminology but still - an HGVS should be post-coordinated in order to disambiguate the genomic information in an HGVS expression, as well as separate its clinical aspects in a post-coordination fashion.

      Summary:

      pre-coordination

            Assignee:
            Unassigned
            Reporter:
            Amnon Shabo
            Amnon Shabo
            Watchers:
            2 Start watching this issue

              Created:
              Updated:
              Resolved: