2015May core #1467 - Make observed nucleotides differing from the reference UPPERCASE and the nucleotides which are the same as the reference lowercase

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    • Type: Change Request
    • Resolution: Persuasive
    • Priority: Medium
    • FHIR Core (FHIR)
    • DSTU1 [deprecated]
    • Clinical Genomics
    • Observation
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      Make observed nucleotides differing from the reference UPPERCASE and the nucleotides which are the same as the reference lowercase

      Alignment issues should be expressed by CIGAR field alone. ObservedAllele and referenceAllele are now plain ATCG sequences

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      Make observed nucleotides differing from the reference UPPERCASE and the nucleotides which are the same as the reference lowercase Alignment issues should be expressed by CIGAR field alone. ObservedAllele and referenceAllele are now plain ATCG sequences
    • Gil Alterovitz/Grant Wood: 5-1-3
    • Clarification
    • Non-compatible

      Comment:

      for CIGAR, recommend making observed nucleotides differing from the reference UPPERCASE and the nucleotides which are the same as the reference lowercase

            Assignee:
            Unassigned
            Reporter:
            mullman
            Watchers:
            2 Start watching this issue

              Created:
              Updated:
              Resolved: